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| DataBase of Conserved Non-coding Sequences |
| Support: Safari(latest), Firefox, Chrome |
Ver.1.0.1 (22 July 2020) |
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(A) Query search (< 10 sec for the example)
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| (A1) Keyword search against CNS DB |
| Example: PAX6b |
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Last common ancestor containing CNS:
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CNS distance from the gene of keyword:
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| (A2) Sequence extraction (< 10 sec for the example) |
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| To start your analysis, press SUBMIT with mode (A). |
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(B) BLAST & alignment (< 1 min as the default setting)
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| Example: fasta file |
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| To start your analysis, press SUBMIT with mode (B). |
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| BLAST options: |
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| -task: Search type |
BLASTN
MAGABLAST
DC-MAGABLAST
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| -word_size: Length of initial exact match |
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| -evalue: E-value threshold for reported sequences |
1e-5
1e-4
1e-3
1e-2
1e-1
1
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| -num_alignments: Number of hits to report per genome |
1
2
3
5
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| -perc_identity: Percent identity cutoff |
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DC-MEGABLAST option:
-template_length: Discontiguous MegaBLAST template length |
16
18
21
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| BLASTDBCMD option: -range: 5'/3' flanking sequence lengths (bp) |
0
500
1000
5000
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